GeneID : Database of genes from NCBI RefSeq genomes

Entrez Gene (www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene) is NCBI's database for gene-specific information. It does not include all known or predicted genes; instead Entrez Gene focuses on the genomes that have been completely sequenced, that have an active research community to contribute gene-specific information, or that are scheduled for intense sequence analysis. The content of Entrez Gene represents the result of curation and automated i... More

Also known as:

  • Entrez Gene Database (replaces NCBI Locus Link),
  • Database of genes from NCBI RefSeq genomes

Facts from the Community

From the Bio2RDF Semantic knowledge map base

Reserved namespace:

  • geneid

Provider homepage:

  • http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene

Identifier example:

  • 7157

URL pattern:

  • http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=%s
  • http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&term=%s

Available format:

Triple number:

  • 8,274,734

Namespace number:

  • 229

Number of triples:

  • 172,931,628

Number of topics:

  • 4,153,063

SPARQL point:

  • http://geneid.bio2rdf.org/sparql

Data source size:

  • 2,800 kB

Data source file format:

Number of species:

  • 5,124

N3 file size:

  • 20,195 kB

Virtuoso DB file size:

  • 14,694 kB

SPARQL port number:

  • 8,902

SPARQL URL:

  • http://geneid.bio2rdf.org/sparql

Bio2RDF namespace:

  • geneid

provider homepage:

  • http://www.ncbi.nlm.nih.gov/gene

From the Polite URI from Biohackathon community base

SPARQL endpoint:

  • http://geneid.bio2rdf.org/sparql

Number of triples:

  • 172,931,628

SPARQL technology:

Provider:

Number of topics:

  • 4,153,063

Biohacker:

Used namespaces:

URI example:

  • http://bio2rdf.org/geneid:15275
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