GlimmerHMM is a eukaryotic gene finder based on a Generalized Hidden
Markov Model (GHMM). Although the gene finder conforms to the overall
mathematical framework of a GHMM, additionally it incorporates splice
site models adapted from the GeneSplicer
program and a decision tree adapted from GlimmerM. It also utilizes
Interpolated Markov Models for the coding and noncoding models .
Currently, GlimmerHMM's GHMM structure includes introns of each pha...
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GlimmerHMM is a eukaryotic gene finder based on a Generalized Hidden
Markov Model (GHMM). Although the gene finder conforms to the overall
mathematical framework of a GHMM, additionally it incorporates splice
site models adapted from the
GeneSplicer
program and a decision tree adapted from
GlimmerM. It also utilizes
Interpolated Markov Models for the coding and noncoding models .
Currently, GlimmerHMM's GHMM structure includes introns of each phase,
intergenic regions, and four types of exons (initial, internal, final,
and single).
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