HGNC : Human Gene Nomenclature Database

We have already approved over 24,000 symbols; the vast majority of these are for protein-coding genes, but also include symbols for pseudogenes, non-coding RNAs, phenotypes and genomic features (see HGNC Search).  Our current priority is assigning nomenclature to genes submitted to us from the Human Genome Project. In addition to this, individual new symbols are requested by scientists,  journals (e.g. Genomics, Nature Genetics) and da... More

Also known as:

  • HUGO Gene Nomenclature Committee,
  • Human Gene Nomenclature Database

Facts from the Community

From the Bio2RDF Semantic knowledge map base

Reserved namespace:

  • hgnc

Description:

  • pThe HUGO Gene Nomenclature Committee (HGNC) designates approved symbols for all human genes, in accordance with the Guidelines for Human Gene Nomenclature (a href=http:www.genenames.orgguidelines.htmlhttp:www.genenames.orgguidelines.htmla). It is necessary to provide a unique symbol for each gene, preferably one which maintains parallel construction in different members of a gene family and can also be used in other species, especially the mouse.ppThe HGNC is responsible for the assignment of these symbols as well as alonger and more descriptive gene name. Considerable efforts are made to use a symbol acceptable to workers in the field, but sometimes it is not possible to use exactly what has previously appeared in the literature. However, wherever the HGNC is aware of such symbols, they are listed as aliases and information on the gene in question can be retrieved by searching with the aliases and the approved symbol in the HGNC Database(a href=http:www.genenames.orgcgi-binhgnc_search.plhttp:www.genenames.orgcgi-binhgnc_search.pla). Approved gene symbols are marked as such and given priority in databases including Entrez Gene, Ensembl, GeneCards, OMIM and GenAtlas. The HGNC also works closely with a number of journals to promote standardization of gene nomenclature. These include Nature Genetics, Nature, Genomics, Human Mutation and Cytogenetic and Genome Research.p
  • Genew, the Human Gene Nomenclature Database, is the only resource that provides data for all human genes which have approved symbols. It is managed by the HUGO Gene Nomenclature Committee (HGNC) as a confidential database, containing over 16,000 records, 80% of which are represented on the Web by searchable text files. The data in Genew are highly curated by HGNC editors and gene records can be searched on the Web by symbol or name to directly retrieve information on gene symbol, gene name, cytogenetic location, OMIM number and PubMed ID. Data are integrated with other human gene databases e.g. GDB, LocusLink and SWISS-PROT and approved gene symbols are carefully co-ordinated with the Mouse Genome Database (MGD). Approved gene symbols are available for querying and browsing at: a href=http:www.gene.ucl.ac.ukcgi-binnomenclaturesearchgenes.plhttp:www.gene.ucl.ac.ukcgi-binnomenclaturesearchgenes.pla.

Provider homepage:

  • http://www.genenames.org/

Identifier example:

  • 11998

URL pattern:

  • http://www.gene.ucl.ac.uk/nomenclature/data/get_data.php?hgnc_id=HGNC:%s
  • http://www.genenames.org/data/hgnc_data.php?hgnc_id=%s

Link From:

Available format:

Triple number:

  • 920,629

Namespace number:

  • 36

Date modified:

  • Mar 17, 2009

Number of triples:

  • 922,523

Number of topics:

  • 29,690

SPARQL point:

  • http://hgnc.bio2rdf.org/sparql

SPARQL port number:

  • 8,928

SPARQL URL:

  • http://hgnc.bio2rdf.org/sparql

has converter:

Bio2RDF namespace:

  • hgnc

provider homepage:

  • http://www.genenames.org/
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