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  Geneious

  Geneious is a commercial, cross-platform bioinformatics application. Geneious comes in a Basic version that is free for academic use, and a commercial Pro version with added features. Geneious bundles various bioinformatics tools under one hood with an easy-to-use email-client-like interface. See...
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  Sequerome

  Sequerome is a web-based Sequence profiling tool that provides the unique and useful functionality of seamlessly integrating an entire BLAST report to a panel of servers that perform advanced sequence manipulations in a tabbed browsing environment. Free access to information is not so much an issue...
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  MAGMA

  MAGMA (Molecular Animation, Graphics and Modeling Application framework) is a rapid application development (RAD) system in the field of molecular modelling, computational chemistry and computational biology. It is an extension dynamic-link library (DLL) for The Microsoft Foundation Class Library ...

• GlimmerHMM

  GlimmerHMM is a eukaryotic gene finder based on a Generalized Hidden Markov Model (GHMM). Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM...

• SplitsTree

  SplitsTree is a popular program for inferring phylogenetic trees or, more generally, phylogenetic networks from various types of data such as a sequence alignment, a distance matrix or a set of trees . According to its developers, SplitsTree uses published methods such as split decomposition...

• Geneworld

• Glimmer

  GLIMMER (Gene Locator and Interpolated Markov ModelER) was the first bioinformatics system for finding genes that used the interpolated Markov model formalism. It is very effective at finding genes in bacteria, archaea, and viruses, typically finding 98–99% of all protein-coding genes. The GLIMMER...

• GeneSplicer

  A fast, flexible system for detecting splice sites in the genomic DNA of various eukaryotes. The system has been trained and tested successfully on Plasmodium falciparum (malaria), Arabidopsis thaliana, human, Drosophila, and rice . Training data sets for human and Arabidopsis thaliana are included...

• Comparative Toxicogenomics Database

  The Comparative Toxicogenomics Database (CTD) is a public website and research tool that curates scientific data describing relationships between chemicals, genes, and human diseases. The database is maintained by the Department of Bioinformatics at The Mount Desert Island Biological Laboratory in...

• Panther

  Panther is a bioinformatics application used for creating ontologies based upon protein structure and function and classifying genes into these ontologies using machine learning techniques, such as Hidden Markov Models.