The protein entries in the Entrez search and retrieval system have been
compiled from a variety of sources, including SwissProt, PIR, PRF, PDB,
and translations from annotated coding regions in GenBank and RefSeq.
Protein : Entrez Protein
Facts from the Community
From the Bio2RDF Semantic knowledge map base
Reserved namespace:
- protein
Description:
- The Protein Kinase Resource (PKR) is a curated information source which provides an integrated view of sequence and structure data combined with biochemical and genetic function data focused on a single family of proteins, the protein kinases. In addition, the PKR provides tools for computational analysis of protein kinase sequence and structure and an email discussion forum devoted to protein kinases.
- The Protein Mutant Database (PMD) is a compilation of protein mutant data, providing information of amino acid mutations at specific positions of proteins and in some cases the structural alterations caused by them. We developed a powerful viewing and retrieving system (a href=http:pmd.ddbj.nig.ac.jphttp:pmd.ddbj.nig.ac.jpa), which is integrated with sequence and tertiary structure databases. The system has the following features: (1) Mutated sequences are displayed after being automatically generated from the information described in the entry together with the sequence data of the wild-type protein. This convenient feature allows the user to see the positions of altered amino acids (shown in a different color) in the entire sequence of the wild-type protein. (2) For those proteins whose 3D structures have been experimentally determined, the 3D structures are displayed with the mutation sites colored differently. (3) A sequence homology search against the PMD can be carried out with any query sequence. (4) A summary of mutations in homologous sequences can be displayed, showing all the mutations of a protein recorded in the PMD.
Provider homepage:
- http://www.genome.ad.jp/dbget-bin/www_bfind_info?protein
Bioinformatics tag:
- bm:Databases of individual protein families
- bm:Protein sequence databases
- bm:Metabolic and Signaling Pathways
- bm:Human Genes and Diseases
