Bio2RDF knowledge atlas about human and mouse - Bio2RDF Semantic knowledge map

Bio2RDF Semantic knowledge map

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table started by bio2rdf for the Bio2RDF Semantic knowledge map Base

This type is assigned to database which are included into Bio2RDF knowledge atlas about human and mouse, a mashup of 65 million triples build from 30 different data sources. The atlas can be searched at bio2rdf.org. Each topic name is composed of the Namespace of the data source followed... More

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30 Bio2RDF knowledge atlas about human and mouse topics matching:

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name	Triple number	Namespace number	Openness ratio	Average link rank

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x BioCarta : Charting pathways of life

14,187

13

x PubChem : Information on biological activities of small molecule

514,473

11

x MeSH : Medical Subject Headings

676,813

8

x GeneID : Database of genes from NCBI RefSeq genomes

8,274,734

229

x GenBank : Nucleotide sequence database

6,973,621

355

x CPD : KEGG Ligand Database for Chemical Compound

148,893

14

x DR : KEGG Ligand Database for Drug

59,595

12

x GL : KEGG Ligand Database for Carbohydrate Structure

94,021

9

x RN : KEGG Ligand Database for Chemical Reaction

96,036

13

x UniRef : UniProt Non-redundant Reference Databases

2,337,175

12

x UniParc : UniProt Archive a non-redundant archive of protein sequences extracted from Swi

5,595,543

33

x UniProt : The Universal Protein Resource

11,781,155

x MGI : Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

1,887,729

x Reactome : A knowledgebase of biological pathways and processes

154,900

21

x PROSITE : A protein domain and family database

283,376

9

x HGNC : Human Gene Nomenclature Database

920,629

36

x Path : KEGG PATHWAY Database

358,843

x InterPro : Integrated resource of protein families, domains and functional sites

203,094

15

x ProDom : A protein domain database

5,140

12

x Keywords : UniProtKB entries are tagged with keywords

11,563

34

x EC : The Enzyme Commission

396,594

19

x HomoloGene : Discover Homologs

6,598,206

13

x UniSTS : Integrating Markers and Maps

3,028,585

26

x Taxonomy : NEWT is the taxonomy database maintained by the UniProt

4,759,509

x GO : Gene Ontology

2,112,358

63

x Pfam

66,836

14

x OMIM : Online Mendelian Inheritance in Man

765,384

18

x PubMed

16,954,831

x ChEBI

310,868

18

x Protein Data Bank (RCSB PDB)

915,604

15

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All topics in this collection are typed as Bio2RDF knowledge atlas about human and mouse

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